Genome-Wide Characterization and Expression Profiling of the AUXIN RESPONSE FACTOR (ARF) Gene Family in Eucalyptus grandis
Identifieur interne : 000042 ( France/Analysis ); précédent : 000041; suivant : 000043Genome-Wide Characterization and Expression Profiling of the AUXIN RESPONSE FACTOR (ARF) Gene Family in Eucalyptus grandis
Auteurs : Hong Yu [France] ; Marçal Soler [France] ; Isabelle Mila [France] ; Hélène San Clemente [France] ; Bruno Savelli [France] ; Christophe Dunand [France] ; Jorge A. P. Paiva [Portugal] ; Alexander A. Myburg [Afrique du Sud] ; Mondher Bouzayen [France] ; Jacqueline Grima-Pettenati [France] ; Hua Cassan-Wang [France]Source :
- PLoS ONE [ 1932-6203 ] ; 2014.
Abstract
Auxin is a central hormone involved in a wide range of developmental processes including the specification of vascular stem cells. Auxin Response Factors (ARF) are important actors of the auxin signalling pathway, regulating the transcription of auxin-responsive genes through direct binding to their promoters. The recent availability of the
Url:
DOI: 10.1371/journal.pone.0108906
PubMed: 25269088
PubMed Central: 4182523
Affiliations:
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PMC:4182523Le document en format XML
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id="aff1"><addr-line>LRSV Laboratoire de Recherche en Sciences Végétales, UMR5546, Université Toulouse III/CNRS, Castanet Tolosan, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>LRSV Laboratoire de Recherche en Sciences Végétales, UMR5546, Université Toulouse III/CNRS, Castanet Tolosan</wicri:regionArea><wicri:noRegion>Castanet Tolosan</wicri:noRegion><wicri:noRegion>Castanet Tolosan</wicri:noRegion></affiliation></author><author><name sortKey="Soler, Marcal" sort="Soler, Marcal" uniqKey="Soler M" first="Marçal" last="Soler">Marçal Soler</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>LRSV Laboratoire de Recherche en Sciences Végétales, UMR5546, Université Toulouse III/CNRS, Castanet Tolosan, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>LRSV Laboratoire de Recherche en Sciences Végétales, UMR5546, Université Toulouse III/CNRS, Castanet Tolosan</wicri:regionArea><wicri:noRegion>Castanet Tolosan</wicri:noRegion><wicri:noRegion>Castanet Tolosan</wicri:noRegion></affiliation></author><author><name sortKey="Mila, Isabelle" sort="Mila, Isabelle" uniqKey="Mila I" first="Isabelle" last="Mila">Isabelle Mila</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Laboratoire de Génomique et Biotechnologie des Fruits, Castanet-Tolosan, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Laboratoire de Génomique et Biotechnologie des Fruits, Castanet-Tolosan</wicri:regionArea><wicri:noRegion>Castanet-Tolosan</wicri:noRegion><wicri:noRegion>Castanet-Tolosan</wicri:noRegion></affiliation></author><author><name sortKey="San Clemente, Helene" sort="San Clemente, Helene" uniqKey="San Clemente H" first="Hélène" last="San Clemente">Hélène San Clemente</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>LRSV Laboratoire de Recherche en Sciences Végétales, UMR5546, Université Toulouse III/CNRS, Castanet Tolosan, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>LRSV Laboratoire de Recherche en Sciences Végétales, UMR5546, Université Toulouse III/CNRS, Castanet Tolosan</wicri:regionArea><wicri:noRegion>Castanet Tolosan</wicri:noRegion><wicri:noRegion>Castanet Tolosan</wicri:noRegion></affiliation></author><author><name sortKey="Savelli, Bruno" sort="Savelli, Bruno" uniqKey="Savelli B" first="Bruno" last="Savelli">Bruno Savelli</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>LRSV Laboratoire de Recherche en Sciences Végétales, UMR5546, Université Toulouse III/CNRS, Castanet Tolosan, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>LRSV Laboratoire de Recherche en Sciences Végétales, UMR5546, Université Toulouse III/CNRS, Castanet Tolosan</wicri:regionArea><wicri:noRegion>Castanet Tolosan</wicri:noRegion><wicri:noRegion>Castanet Tolosan</wicri:noRegion></affiliation></author><author><name sortKey="Dunand, Christophe" sort="Dunand, Christophe" uniqKey="Dunand C" first="Christophe" last="Dunand">Christophe Dunand</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>LRSV Laboratoire de Recherche en Sciences Végétales, UMR5546, Université Toulouse III/CNRS, Castanet Tolosan, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>LRSV Laboratoire de Recherche en Sciences Végétales, UMR5546, Université Toulouse III/CNRS, Castanet Tolosan</wicri:regionArea><wicri:noRegion>Castanet Tolosan</wicri:noRegion><wicri:noRegion>Castanet Tolosan</wicri:noRegion></affiliation></author><author><name sortKey="Paiva, Jorge A P" sort="Paiva, Jorge A P" uniqKey="Paiva J" first="Jorge A. P." last="Paiva">Jorge A. P. Paiva</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Instituto de Investigação Científica e Tropical (IICT/MCTES), Lisboa, Portugal</addr-line></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea>Instituto de Investigação Científica e Tropical (IICT/MCTES), Lisboa</wicri:regionArea><wicri:noRegion>Lisboa</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Instituto de Biologia Experimental e Tecnológica (IBET), Oeiras, Portugal</addr-line></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea>Instituto de Biologia Experimental e Tecnológica (IBET), Oeiras</wicri:regionArea><wicri:noRegion>Oeiras</wicri:noRegion></affiliation></author><author><name sortKey="Myburg, Alexander A" sort="Myburg, Alexander A" uniqKey="Myburg A" first="Alexander A." last="Myburg">Alexander A. Myburg</name><affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), Genomics Research Institute (GRI), University of Pretoria, Pretoria, South Africa</addr-line></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), Genomics Research Institute (GRI), University of Pretoria, Pretoria</wicri:regionArea><wicri:noRegion>Pretoria</wicri:noRegion></affiliation></author><author><name sortKey="Bouzayen, Mondher" sort="Bouzayen, Mondher" uniqKey="Bouzayen M" first="Mondher" last="Bouzayen">Mondher Bouzayen</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Laboratoire de Génomique et Biotechnologie des Fruits, Castanet-Tolosan, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Laboratoire de Génomique et Biotechnologie des Fruits, Castanet-Tolosan</wicri:regionArea><wicri:noRegion>Castanet-Tolosan</wicri:noRegion><wicri:noRegion>Castanet-Tolosan</wicri:noRegion></affiliation></author><author><name sortKey="Grima Pettenati, Jacqueline" sort="Grima Pettenati, Jacqueline" uniqKey="Grima Pettenati J" first="Jacqueline" last="Grima-Pettenati">Jacqueline Grima-Pettenati</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>LRSV Laboratoire de Recherche en Sciences Végétales, UMR5546, Université Toulouse III/CNRS, Castanet Tolosan, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>LRSV Laboratoire de Recherche en Sciences Végétales, UMR5546, Université Toulouse III/CNRS, Castanet Tolosan</wicri:regionArea><wicri:noRegion>Castanet Tolosan</wicri:noRegion><wicri:noRegion>Castanet Tolosan</wicri:noRegion></affiliation></author><author><name sortKey="Cassan Wang, Hua" sort="Cassan Wang, Hua" uniqKey="Cassan Wang H" first="Hua" last="Cassan-Wang">Hua Cassan-Wang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>LRSV Laboratoire de Recherche en Sciences Végétales, UMR5546, Université Toulouse III/CNRS, Castanet Tolosan, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>LRSV Laboratoire de Recherche en Sciences Végétales, UMR5546, Université Toulouse III/CNRS, Castanet Tolosan</wicri:regionArea><wicri:noRegion>Castanet Tolosan</wicri:noRegion><wicri:noRegion>Castanet Tolosan</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Auxin is a central hormone involved in a wide range of developmental processes including the specification of vascular stem cells. Auxin Response Factors (ARF) are important actors of the auxin signalling pathway, regulating the transcription of auxin-responsive genes through direct binding to their promoters. The recent availability of the <italic>Eucalyptus grandis</italic> genome sequence allowed us to examine the characteristics and evolutionary history of this gene family in a woody plant of high economic importance. With 17 members, the <italic>E. grandis ARF</italic> gene family is slightly contracted, as compared to those of most angiosperms studied hitherto, lacking traces of duplication events. <italic>In silico</italic> analysis of alternative transcripts and gene truncation suggested that these two mechanisms were preeminent in shaping the functional diversity of the <italic>ARF</italic> family in <italic>Eucalyptus</italic>. Comparative phylogenetic analyses with genomes of other taxonomic lineages revealed the presence of a new ARF clade found preferentially in woody and/or perennial plants. High-throughput expression profiling among different organs and tissues and in response to environmental cues highlighted genes expressed in vascular cambium and/or developing xylem, responding dynamically to various environmental stimuli. Finally, this study allowed identification of three <italic>ARF</italic> candidates potentially involved in the auxin-regulated transcriptional program underlying wood formation.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Woodward, Aw" uniqKey="Woodward A">AW Woodward</name></author><author><name sortKey="Bartel, B" uniqKey="Bartel B">B Bartel</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Miyashima, S" uniqKey="Miyashima S">S Miyashima</name></author><author><name sortKey="Sebastian, J" uniqKey="Sebastian J">J Sebastian</name></author><author><name sortKey="Lee, Jy" uniqKey="Lee J">JY Lee</name></author><author><name sortKey="Helariutta, Y" uniqKey="Helariutta Y">Y Helariutta</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tuominen, H" uniqKey="Tuominen H">H Tuominen</name></author><author><name sortKey="Puech, L" uniqKey="Puech L">L 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uniqKey="Lafarguette F">F Lafarguette</name></author><author><name sortKey="Boyle, B" uniqKey="Boyle B">B Boyle</name></author><author><name sortKey="Pavy, N" uniqKey="Pavy N">N Pavy</name></author><author><name sortKey="Caron, S" uniqKey="Caron S">S Caron</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pitre, Fe" uniqKey="Pitre F">FE Pitre</name></author><author><name sortKey="Pollet, B" uniqKey="Pollet B">B Pollet</name></author><author><name sortKey="Lafarguette, F" uniqKey="Lafarguette F">F Lafarguette</name></author><author><name sortKey="Cooke, Je" uniqKey="Cooke J">JE Cooke</name></author><author><name sortKey="Mackay, Jj" uniqKey="Mackay J">JJ MacKay</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sorce, C" uniqKey="Sorce C">C Sorce</name></author><author><name sortKey="Giovannelli, A" uniqKey="Giovannelli A">A Giovannelli</name></author><author><name sortKey="Sebastiani, L" uniqKey="Sebastiani L">L Sebastiani</name></author><author><name sortKey="Anfodillo, T" uniqKey="Anfodillo T">T Anfodillo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Love, J" uniqKey="Love J">J Love</name></author><author><name sortKey="Bjorklund, S" uniqKey="Bjorklund S">S Björklund</name></author><author><name sortKey="Vahala, J" uniqKey="Vahala J">J Vahala</name></author><author><name sortKey="Hertzberg, M" uniqKey="Hertzberg M">M Hertzberg</name></author><author><name sortKey="Kangasj Rvi, J" uniqKey="Kangasj Rvi J">J Kangasjärvi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Edgar, Rc" uniqKey="Edgar R">RC Edgar</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Afrique du Sud</li><li>France</li><li>Portugal</li></country></list><tree><country name="France"><noRegion><name sortKey="Yu, Hong" sort="Yu, Hong" uniqKey="Yu H" first="Hong" last="Yu">Hong Yu</name></noRegion><name sortKey="Bouzayen, Mondher" sort="Bouzayen, Mondher" uniqKey="Bouzayen M" first="Mondher" last="Bouzayen">Mondher Bouzayen</name><name sortKey="Cassan Wang, Hua" sort="Cassan Wang, Hua" uniqKey="Cassan Wang H" first="Hua" last="Cassan-Wang">Hua Cassan-Wang</name><name sortKey="Dunand, Christophe" sort="Dunand, Christophe" uniqKey="Dunand C" first="Christophe" last="Dunand">Christophe Dunand</name><name sortKey="Grima Pettenati, Jacqueline" sort="Grima Pettenati, Jacqueline" uniqKey="Grima Pettenati J" first="Jacqueline" last="Grima-Pettenati">Jacqueline Grima-Pettenati</name><name sortKey="Mila, Isabelle" sort="Mila, Isabelle" uniqKey="Mila I" first="Isabelle" last="Mila">Isabelle Mila</name><name sortKey="San Clemente, Helene" sort="San Clemente, Helene" uniqKey="San Clemente H" first="Hélène" last="San Clemente">Hélène San Clemente</name><name sortKey="Savelli, Bruno" sort="Savelli, Bruno" uniqKey="Savelli B" first="Bruno" last="Savelli">Bruno Savelli</name><name sortKey="Soler, Marcal" sort="Soler, Marcal" uniqKey="Soler M" first="Marçal" last="Soler">Marçal Soler</name></country><country name="Portugal"><noRegion><name sortKey="Paiva, Jorge A P" sort="Paiva, Jorge A P" uniqKey="Paiva J" first="Jorge A. P." last="Paiva">Jorge A. P. Paiva</name></noRegion><name sortKey="Paiva, Jorge A P" sort="Paiva, Jorge A P" uniqKey="Paiva J" first="Jorge A. P." last="Paiva">Jorge A. P. Paiva</name></country><country name="Afrique du Sud"><noRegion><name sortKey="Myburg, Alexander A" sort="Myburg, Alexander A" uniqKey="Myburg A" first="Alexander A." last="Myburg">Alexander A. Myburg</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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